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Symposium

Public symposium of the BioHackathon 2011 will be held at Campus Plaza Kyoto (next to the Kyoto station) on Aug 21.

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9:30 Registration opens @ 5F

10:00 Opening remarks

Toshiaki Katayama Introduction to the NBDC/DBCLS BioHackathon 2011
Atsuko Yamaguchi The Program Concerning Technology Development for Database Integration

10:30 Morning session (long talks)

Jerven Bolleman SPARQLing UniProt RDF: Using RDF based technologies to aid biological curation efforts
Joachim Baran BioMart introduces semantic-web querying to federated biomedical-scale databases
Mark Wilkinson SADI and Semantic Web services

11:45 Group photo

12:00 Lunch

13:30 Afternoon session (short talks 5~10min each)

Andrea Splendiani Biomedical semantics in the Semantic Web
Michel Dumontier From Triples to Axioms: On the Path to Formalizing Scientific Knowledge
Matus Kalas The EDAM ontology of data and methods, and BioXSD
Trish Whetzel NCBO Web services and the Development of Semantic Applications
Vladimir Mironov RDF Foundry - a call for a community effort to harmonize triple store practices
Susanna Sansone BioSharing: data sharing standards, resources and cooperating procedures
Philippe Rocca-Serra ISA infrastructure: collecting and managing multi-omics datasets with rich semantics
Camille Laibe MIRIAM Registry: annotations and cross referencing framework
short break
Erick Antezana Semantic Systems Biology: enabling integrative biology via Semantic Web technologies
Robert Hoehndorf Ontology-based integration and analysis of phenotypes
Bruno Aranda PSICQUIC - Standard access to molecular interaction databases
Kevin Livingston Modeling and Populating a Large Biomedical Knowledge Base for Genome-Scale Analysis
Rutger Vos The Tree of Life as central unifying concept for the integration of phylogenetic knowledge
Chris Zmasek Connecting TOPSAN to Computational Analysis via Semantic Web Technology
Martin Gerner Large-scale information extraction through text mining
Pyung Kim URI Resolution and Management Service with LOD
Open Bio* projects Interoperable libraries for the Semantic Web


16:00 Open space discussion

This is an unconference style session: a participant-driven meeting to explore problems to solve during the BioHackathon week. The results of this session will be recorded on a Wiki page.

18:30 Reception @ 2F hall

Note: Registration is required for domestic participants!

20:30 Closing
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