Public symposium of the BioHackathon 2011 will be held at Campus Plaza Kyoto (next to the Kyoto station) on Aug 21.
Live streaming will be available at
Video streaming by Ustream
9:30 Registration opens @ 5F
10:00 Opening remarks
| Toshiaki Katayama |
Introduction to the NBDC/DBCLS BioHackathon 2011 |
| Atsuko Yamaguchi |
The Program Concerning Technology Development for Database Integration |
10:30 Morning session (long talks)
| Jerven Bolleman |
SPARQLing UniProt RDF: Using RDF based technologies to aid biological curation efforts |
| Joachim Baran |
BioMart introduces semantic-web querying to federated biomedical-scale databases |
| Mark Wilkinson |
SADI and Semantic Web services |
11:45 Group photo
12:00 Lunch
13:30 Afternoon session (short talks 5~10min each)
| Andrea Splendiani |
Biomedical semantics in the Semantic Web |
| Michel Dumontier |
From Triples to Axioms: On the Path to Formalizing Scientific Knowledge |
| Matus Kalas |
The EDAM ontology of data and methods, and BioXSD |
| Trish Whetzel |
NCBO Web services and the Development of Semantic Applications |
| Vladimir Mironov |
RDF Foundry - a call for a community effort to harmonize triple store practices |
| Susanna Sansone |
BioSharing: data sharing standards, resources and cooperating procedures |
| Philippe Rocca-Serra |
ISA infrastructure: collecting and managing multi-omics datasets with rich semantics |
| Camille Laibe |
MIRIAM Registry: annotations and cross referencing framework |
| short break |
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| Erick Antezana |
Semantic Systems Biology: enabling integrative biology via Semantic Web technologies |
| Robert Hoehndorf |
Ontology-based integration and analysis of phenotypes |
| Bruno Aranda |
PSICQUIC - Standard access to molecular interaction databases |
| Kevin Livingston |
Modeling and Populating a Large Biomedical Knowledge Base for Genome-Scale Analysis |
| Rutger Vos |
The Tree of Life as central unifying concept for the integration of phylogenetic knowledge |
| Chris Zmasek |
Connecting TOPSAN to Computational Analysis via Semantic Web Technology |
| Martin Gerner |
Large-scale information extraction through text mining |
| Pyung Kim |
URI Resolution and Management Service with LOD |
| Open Bio* projects |
Interoperable libraries for the Semantic Web |
16:00 Open space discussion
This is an unconference style session: a participant-driven meeting to explore problems to solve during the BioHackathon week. The results of this session will be recorded on a Wiki page.
18:30 Reception @ 2F hall
20:30 Closing
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