Standards and formats
Semantic Web technologies
- RDF
- Turtle
- OWL
- SPARQL
- SPIN
- DL
- TC
- Entailment
Semantic Web services
- SADI
- Bio2RDF
- BioGateway
- BioMart
- UniProt RDF
- PSICQUIC
- TogoDB
- TogoWS
- Semantic MEDLINE
- TreeBASE
Ontologies and controlled vocabularies
- Dublin Core
- FOAF
- VoID
- SKOS
- SERV
- BFO
- SIO
- EDAM
- myGrid
- SIOC
- OBI
- OBO
- GO
- SO
- CCO
- SBO
- AO
- PAV
- OLS
- CDAO
See http://www.biosharing.org/standards for more!
Communities and projects
- SWAT4LS
- ISWC
- ICBO
- SemTech
- W3C HCLC
- BioPortal
- BioLOD
- SharedNames
- BioXSD
- BioDBcore
- BioCatalogue
- myExperiment
- BioModels
- BioSharing
- ISA
- ISB
- MIBBI
- Minimum Information for Biological and Biomedical Investigations
- MIABi
- MIAPA
- PSI
- Dryad
- International repository of data underlying peer-reviewed articles in the basic and applied biosciences.
- http://www.datadryad.org/
- FuGE
- GSC
- SIGS
- Science Commons
- TOPSAN
Institutions and organizations
- JST
- NBDC
- ROIS
- DBCLS
- DDBJ
- PDBj
- KEGG
- CBRC
- NCBC
- NCBO
- NCBI
- UCSC
- BBSRC
- EMBRACE
- EBI
- IFOMIS
- OBF
Bioinformatics software
- BioPerl
- BioPython
- BioRuby
- BioJava
- Protege
- Taverna
- Cytoscape
- OLSVis
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URI
-
Uniform Resource Identifier
-
URL
-
API
-
Application Program Interface
-
XML
-
Extensible Markup Language
- HTTP
-
Hypertext Transfer Protocol
-
SOAP
-
Simple Object Access Protocol
-
WSDL
-
Web Services Description Language
-
REST
-
Representational State Transfer
-
JSON
-
JavaScript Object Notation
- BSON
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